Index

A

AcyclicGraphGenerator (class in cdt.data) AdjMI (class in cdt.independence.stats) ANM (class in cdt.causality.pairwise)

anm_score() (cdt.causality.pairwise.ANM method) aracne() (in module cdt.utils.graph) ARD (class in cdt.independence.graph) autoset_settings() (in module cdt.utils.Settings)

B

b_fit_score() (cdt.causality.pairwise.BivariateFit method) (cdt.causality.pairwise.RECI method)

BivariateFit (class in cdt.causality.pairwise) BNlearnAlgorithm (class in cdt.causality.graph.bnlearn)

C

CAM (class in cdt.causality.graph) CausalPairGenerator (class in cdt.data) CCDr (class in cdt.causality.graph) CDS (class in cdt.causality.pairwise) cds_score() (cdt.causality.pairwise.CDS method) cdt.causality.graph module cdt.causality.pairwise module cdt.data module cdt.independence.graph module cdt.independence.stats module cdt.metrics module cdt.utils module cdt.utils.graph module cdt.utils.io module cdt.utils.loss module

cdt.utils.parallel module cdt.utils.R module cdt.utils.Settings module cdt.utils.torch module CGNN (class in cdt.causality.graph) CGNN_model (class in cdt.causality.graph.model) ChannelBatchNorm1d (class in cdt.utils.torch) check_R_package() (cdt.utils.R.DefaultRPackages method) clr() (in module cdt.utils.graph) ConfigSettings (class in cdt.utils.Settings) create_graph_from_data() (cdt.causality.graph.bnlearn.BNlearnAlgorithm method) (cdt.causality.graph.CAM method) (cdt.causality.graph.CCDr method) (cdt.causality.graph.CGNN method) (cdt.causality.graph.GES method) (cdt.causality.graph.GIES method) (cdt.causality.graph.LiNGAM method) (cdt.causality.graph.model.GraphModel method) (cdt.causality.graph.PC method)

D

dagify_min_edge() (in module cdt.utils.graph)

DecisionTreeRegression (class in cdt.independence.graph) DefaultRPackages (class in cdt.utils.R)

E

extra_repr() (cdt.utils.torch.Linear3D method)

F

Fast_IAMB (class in cdt.causality.graph.bnlearn) FeatureSelectionModel (class in cdt.independence.graph.model) featurize_row() (cdt.causality.pairwise.RCC method) fit() (cdt.causality.pairwise.NCC method) (cdt.causality.pairwise.RCC method) forward() (cdt.causality.graph.model.CGNN_model method) (cdt.causality.graph.model.SAM_discriminator method) (cdt.causality.graph.model.SAM_generators method) (cdt.causality.pairwise.model.GNN_model method) (cdt.causality.pairwise.model.NCC_model method) (cdt.independence.graph.model.FSGNN_model method) (cdt.utils.torch.ChannelBatchNorm1d method) (cdt.utils.torch.Linear3D method) (cdt.utils.torch.MatrixSampler method)

FSGNN (class in cdt.independence.graph) FSGNN_model (class in cdt.independence.graph.model)

G

generate() (cdt.data.AcyclicGraphGenerator method) (cdt.data.CausalPairGenerator method) GES (class in cdt.causality.graph) get_default() (cdt.utils.Settings.ConfigSettings method) GIES (class in cdt.causality.graph) Glasso (class in cdt.independence.graph)

GNN (class in cdt.causality.pairwise) GNN_model (class in cdt.causality.pairwise.model) GraphModel (class in cdt.causality.graph.model) GraphSkeletonModel (class in cdt.independence.graph.model) GS (class in cdt.causality.graph.bnlearn) gumbel_softmax() (in module cdt.utils.torch)

H

HSICLasso (class in cdt.independence.graph)

I

IAMB (class in cdt.causality.graph.bnlearn) IGCI (class in cdt.causality.pairwise) IndependenceModel (class in cdt.independence.stats.model)

init_dag() (cdt.data.AcyclicGraphGenerator method) init_variables() (cdt.data.AcyclicGraphGenerator method) Inter_IAMB (class in cdt.causality.graph.bnlearn)

J

Jarfo (class in cdt.causality.pairwise)

K

KendallTau (class in cdt.independence.stats)

L

launch_R_script() (in module cdt.utils.R) Linear3D (class in cdt.utils.torch) LinearSVRL2 (class in cdt.independence.graph)

LiNGAM (class in cdt.causality.graph) load_dataset() (in module cdt.data) loop() (cdt.utils.loss.TTestCriterion method)

M

MatrixSampler (class in cdt.utils.torch) MIRegression (class in cdt.independence.stats) MMDloss (class in cdt.utils.loss) MMPC (class in cdt.causality.graph.bnlearn) module cdt.causality.graph cdt.causality.pairwise cdt.data cdt.independence.graph cdt.independence.stats cdt.metrics cdt.utils cdt.utils.graph cdt.utils.io cdt.utils.loss cdt.utils.parallel cdt.utils.R cdt.utils.Settings cdt.utils.torch

MomentMatchingLoss (class in cdt.utils.loss)

N

NCC (class in cdt.causality.pairwise) NCC_model (class in cdt.causality.pairwise.model) network_deconvolution() (in module cdt.utils.graph)

NormalizedHSIC (class in cdt.independence.stats) NormMI (class in cdt.independence.stats) notears_constr() (in module cdt.utils.loss)

O

orient_directed_graph() (cdt.causality.graph.bnlearn.BNlearnAlgorithm method) (cdt.causality.graph.CGNN method) (cdt.causality.graph.GES method) (cdt.causality.graph.GIES method) (cdt.causality.graph.model.GraphModel method) (cdt.causality.graph.PC method) orient_graph() (cdt.causality.pairwise.GNN method) (cdt.causality.pairwise.Jarfo method) (cdt.causality.pairwise.model.PairwiseModel method)

orient_undirected_graph() (cdt.causality.graph.bnlearn.BNlearnAlgorithm method) (cdt.causality.graph.CGNN method) (cdt.causality.graph.GES method) (cdt.causality.graph.GIES method) (cdt.causality.graph.model.GraphModel method) (cdt.causality.graph.PC method)

P

PairwiseModel (class in cdt.causality.pairwise.model) parallel_run() (in module cdt.utils.parallel) parallel_run_generator() (in module cdt.utils.parallel) PC (class in cdt.causality.graph) PearsonCorrelation (class in cdt.independence.stats) precision_recall() (in module cdt.metrics) predict() (cdt.causality.graph.model.GraphModel method) (cdt.causality.graph.SAM method) (cdt.causality.graph.SAMv1 method) (cdt.causality.pairwise.model.PairwiseModel method) (cdt.independence.graph.FSGNN method) (cdt.independence.graph.Glasso method) (cdt.independence.graph.model.FeatureSelectionModel method) (cdt.independence.graph.model.GraphSkeletonModel method) (cdt.independence.stats.AdjMI method) (cdt.independence.stats.KendallTau method) (cdt.independence.stats.MIRegression method) (cdt.independence.stats.model.IndependenceModel method) (cdt.independence.stats.NormalizedHSIC method) (cdt.independence.stats.NormMI method) (cdt.independence.stats.PearsonCorrelation method) (cdt.independence.stats.SpearmanCorrelation method)

predict_dataset() (cdt.causality.pairwise.Jarfo method) (cdt.causality.pairwise.model.PairwiseModel method) (cdt.causality.pairwise.NCC method) predict_features() (cdt.independence.graph.ARD method) (cdt.independence.graph.DecisionTreeRegression method) (cdt.independence.graph.FSGNN method) (cdt.independence.graph.HSICLasso method) (cdt.independence.graph.LinearSVRL2 method) (cdt.independence.graph.model.FeatureSelectionModel method) predict_proba() (cdt.causality.pairwise.ANM method) (cdt.causality.pairwise.BivariateFit method) (cdt.causality.pairwise.CDS method) (cdt.causality.pairwise.GNN method) (cdt.causality.pairwise.IGCI method) (cdt.causality.pairwise.Jarfo method) (cdt.causality.pairwise.model.PairwiseModel method) (cdt.causality.pairwise.NCC method) (cdt.causality.pairwise.RCC method) (cdt.causality.pairwise.RECI method) predict_undirected_graph() (cdt.independence.stats.model.IndependenceModel method)

R

RCC (class in cdt.causality.pairwise) read_adjacency_matrix() (in module cdt.utils.io) read_causal_pairs() (in module cdt.utils.io) read_list_edges() (in module cdt.utils.io)

RECI (class in cdt.causality.pairwise) remove_indirect_links() (in module cdt.utils.graph) run() (cdt.causality.graph.model.CGNN_model method) (cdt.causality.pairwise.model.GNN_model method) run_feature_selection() (cdt.independence.graph.model.FeatureSelectionModel method)

S

SAM (class in cdt.causality.graph) SAM_discriminator (class in cdt.causality.graph.model) SAM_generators (class in cdt.causality.graph.model)

SAMv1 (class in cdt.causality.graph) SHD() (in module cdt.metrics) SID() (in module cdt.metrics) SpearmanCorrelation (class in cdt.independence.stats)

T

to_csv() (cdt.data.AcyclicGraphGenerator method) (cdt.data.CausalPairGenerator method)

train() (cdt.independence.graph.model.FSGNN_model method) TTestCriterion (class in cdt.utils.loss)