cdt.utils
=========
.. automodule:: cdt.utils

cdt.utils.R
-----------------------
.. automodule:: cdt.utils.R
.. autoclass:: DefaultRPackages
   :members:

.. autofunction:: launch_R_script


cdt.utils.io
------------
.. automodule:: cdt.utils.io

.. autofunction:: read_causal_pairs
.. autofunction:: read_adjacency_matrix
.. autofunction:: read_list_edges

cdt.utils.graph
---------------
.. automodule:: cdt.utils.graph
.. autofunction:: network_deconvolution
.. autofunction:: aracne
.. autofunction:: clr
.. autofunction:: remove_indirect_links
.. autofunction:: dagify_min_edge

cdt.utils.loss
--------------
.. automodule:: cdt.utils.loss

.. autoclass:: MMDloss

.. autoclass:: MomentMatchingLoss

.. autoclass:: TTestCriterion
   :members:

.. autofunction:: notears_constr

cdt.utils.parallel
------------------
.. automodule:: cdt.utils.parallel

.. autofunction:: parallel_run

.. autofunction:: parallel_run_generator

cdt.utils.torch
---------------
.. automodule:: cdt.utils.torch

.. autoclass:: ChannelBatchNorm1d
   :members:

.. autoclass:: Linear3D
   :members:

.. autofunction:: gumbel_softmax

.. autoclass:: MatrixSampler
   :members: